Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across Populus Plantations in North America and an Undescribed Subpopulation of Sphaerulina musiva.
Identifieur interne : 000193 ( Main/Exploration ); précédent : 000192; suivant : 000194Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across Populus Plantations in North America and an Undescribed Subpopulation of Sphaerulina musiva.
Auteurs : J F Tabima [États-Unis] ; K L S Ndreli [États-Unis] ; S. Keriö [États-Unis] ; N. Feau [Canada] ; M L Sakalidis [États-Unis] ; R C Hamelin [Canada] ; J M Leboldus [États-Unis]Source :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Ascomycota.
- microbiologie : Maladies des plantes, Populus.
- Amérique du Nord, Canada, Humains, Métagénomique, Variation génétique.
- Wicri :
- geographic : Canada.
English descriptors
- KwdEn :
- MESH :
- geographic : Canada, North America.
- genetics : Ascomycota.
- microbiology : Plant Diseases, Populus.
- Genetic Variation, Humans, Metagenomics.
Abstract
Domestication of plant species has affected the evolutionary dynamics of plant pathogens in agriculture and forestry. A model system for studying the consequences of plant domestication on the evolution of an emergent plant disease is the fungal pathogen Sphaerulina musiva. This ascomycete causes leaf spot and stem canker disease of Populus spp. and their hybrids. A population genomics approach was used to determine the degree of population structure and evidence for selection on the North American population of S. musiva. In total, 122 samples of the fungus were genotyped identifying 120,016 single-nucleotide polymorphisms after quality filtering. In North America, S. musiva has low to moderate degrees of differentiation among locations. Three main genetic clusters were detected: southeastern United States, midwestern United States and Canada, and a new British Columbia cluster (BC2). Population genomics suggest that BC2 is a novel genetic cluster from central British Columbia, clearly differentiated from previously reported S. musiva from coastal British Columbia, and the product of a single migration event. Phenotypic measurements from greenhouse experiments indicate lower aggressiveness of BC2 on Populus trichocarpa. In summary, S. musiva has geographic structure across broad regions indicative of gene flow among clusters. The interconnectedness of the North American S. musiva populations across large geographic distances further supports the hypothesis of anthropogenic-facilitated transport of the pathogen.
DOI: 10.1094/MPMI-05-19-0131-R
PubMed: 31593527
Affiliations:
- Canada, États-Unis
- Colombie-Britannique , Michigan
- East Lansing, Vancouver
- Université d'État du Michigan, Université de la Colombie-Britannique
Links toward previous steps (curation, corpus...)
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Keriö</name><affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis</wicri:regionArea><wicri:noRegion>Corvallis</wicri:noRegion></affiliation></author><author><name sortKey="Feau, N" sort="Feau, N" uniqKey="Feau N" first="N" last="Feau">N. Feau</name><affiliation wicri:level="4"><nlm:affiliation>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia</wicri:regionArea><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName><orgName type="university">Université de la Colombie-Britannique</orgName></affiliation></author><author><name sortKey="Sakalidis, M L" sort="Sakalidis, M L" uniqKey="Sakalidis M" first="M L" last="Sakalidis">M L Sakalidis</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant, Soil and Microbial Sciences and the Department of Forestry, College of Agriculture & Natural Resources, Michigan State University, East Lansing, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant, Soil and Microbial Sciences and the Department of Forestry, College of Agriculture & Natural Resources, Michigan State University, East Lansing</wicri:regionArea><orgName type="university">Université d'État du Michigan</orgName><placeName><settlement type="city">East Lansing</settlement><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Hamelin, R C" sort="Hamelin, R C" uniqKey="Hamelin R" first="R C" last="Hamelin">R C Hamelin</name><affiliation wicri:level="4"><nlm:affiliation>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia</wicri:regionArea><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName><orgName type="university">Université de la Colombie-Britannique</orgName></affiliation></author><author><name sortKey="Leboldus, J M" sort="Leboldus, J M" uniqKey="Leboldus J" first="J M" last="Leboldus">J M Leboldus</name><affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis</wicri:regionArea><wicri:noRegion>Corvallis</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Department of Forest Engineering, Resources and Management, College of Forestry, Oregon State University.</nlm:affiliation><wicri:noCountry code="subField">Oregon State University</wicri:noCountry></affiliation></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (genetics)</term><term>Canada (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Humans (MeSH)</term><term>Metagenomics (MeSH)</term><term>North America (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Populus (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amérique du Nord (MeSH)</term><term>Ascomycota (génétique)</term><term>Canada (MeSH)</term><term>Humains (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Métagénomique (MeSH)</term><term>Populus (microbiologie)</term><term>Variation génétique (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Canada</term><term>North America</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Ascomycota</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Variation</term><term>Humans</term><term>Metagenomics</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Amérique du Nord</term><term>Canada</term><term>Humains</term><term>Métagénomique</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Domestication of plant species has affected the evolutionary dynamics of plant pathogens in agriculture and forestry. A model system for studying the consequences of plant domestication on the evolution of an emergent plant disease is the fungal pathogen <i>Sphaerulina musiva</i>. This ascomycete causes leaf spot and stem canker disease of <i>Populus</i> spp. and their hybrids. A population genomics approach was used to determine the degree of population structure and evidence for selection on the North American population of <i>S. musiva</i>. In total, 122 samples of the fungus were genotyped identifying 120,016 single-nucleotide polymorphisms after quality filtering. In North America, <i>S. musiva</i> has low to moderate degrees of differentiation among locations. Three main genetic clusters were detected: southeastern United States, midwestern United States and Canada, and a new British Columbia cluster (BC2). Population genomics suggest that BC2 is a novel genetic cluster from central British Columbia, clearly differentiated from previously reported <i>S. musiva</i> from coastal British Columbia, and the product of a single migration event. Phenotypic measurements from greenhouse experiments indicate lower aggressiveness of BC2 on <i>Populus trichocarpa.</i> In summary, <i>S. musiva</i> has geographic structure across broad regions indicative of gene flow among clusters. The interconnectedness of the North American <i>S. musiva</i> populations across large geographic distances further supports the hypothesis of anthropogenic-facilitated transport of the pathogen.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31593527</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>02</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><Volume>33</Volume><Issue>2</Issue><PubDate><Year>2020</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across <i>Populus</i> Plantations in North America and an Undescribed Subpopulation of <i>Sphaerulina musiva</i>.</ArticleTitle><Pagination><MedlinePgn>189-199</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-05-19-0131-R</ELocationID><Abstract><AbstractText>Domestication of plant species has affected the evolutionary dynamics of plant pathogens in agriculture and forestry. A model system for studying the consequences of plant domestication on the evolution of an emergent plant disease is the fungal pathogen <i>Sphaerulina musiva</i>. This ascomycete causes leaf spot and stem canker disease of <i>Populus</i> spp. and their hybrids. A population genomics approach was used to determine the degree of population structure and evidence for selection on the North American population of <i>S. musiva</i>. In total, 122 samples of the fungus were genotyped identifying 120,016 single-nucleotide polymorphisms after quality filtering. In North America, <i>S. musiva</i> has low to moderate degrees of differentiation among locations. Three main genetic clusters were detected: southeastern United States, midwestern United States and Canada, and a new British Columbia cluster (BC2). Population genomics suggest that BC2 is a novel genetic cluster from central British Columbia, clearly differentiated from previously reported <i>S. musiva</i> from coastal British Columbia, and the product of a single migration event. Phenotypic measurements from greenhouse experiments indicate lower aggressiveness of BC2 on <i>Populus trichocarpa.</i> In summary, <i>S. musiva</i> has geographic structure across broad regions indicative of gene flow among clusters. The interconnectedness of the North American <i>S. musiva</i> populations across large geographic distances further supports the hypothesis of anthropogenic-facilitated transport of the pathogen.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tabima</LastName><ForeName>J F</ForeName><Initials>JF</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Søndreli</LastName><ForeName>K L</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Keriö</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Feau</LastName><ForeName>N</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sakalidis</LastName><ForeName>M L</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Department of Plant, Soil and Microbial Sciences and the Department of Forestry, College of Agriculture & Natural Resources, Michigan State University, East Lansing, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hamelin</LastName><ForeName>R C</ForeName><Initials>RC</Initials><AffiliationInfo><Affiliation>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>LeBoldus</LastName><ForeName>J M</ForeName><Initials>JM</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3303-4269</Identifier><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis, U.S.A.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Forest Engineering, Resources and Management, College of Forestry, Oregon State University.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>12</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Plant Microbe Interact</MedlineTA><NlmUniqueID>9107902</NlmUniqueID><ISSNLinking>0894-0282</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="Y">Ascomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002170" MajorTopicYN="N" Type="Geographic">Canada</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056186" MajorTopicYN="Y">Metagenomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009656" MajorTopicYN="N" Type="Geographic">North America</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="Y">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">genomics</Keyword><Keyword MajorTopicYN="N">microbial ecology</Keyword><Keyword MajorTopicYN="N">population biology</Keyword><Keyword MajorTopicYN="N">population genetics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>10</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>10</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31593527</ArticleId><ArticleId IdType="doi">10.1094/MPMI-05-19-0131-R</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Canada</li><li>États-Unis</li></country><region><li>Colombie-Britannique </li><li>Michigan</li></region><settlement><li>East Lansing</li><li>Vancouver</li></settlement><orgName><li>Université d'État du Michigan</li><li>Université de la Colombie-Britannique</li></orgName></list><tree><country name="États-Unis"><noRegion><name sortKey="Tabima, J F" sort="Tabima, J F" uniqKey="Tabima J" first="J F" last="Tabima">J F Tabima</name></noRegion><name sortKey="Kerio, S" sort="Kerio, S" uniqKey="Kerio S" first="S" last="Keriö">S. Keriö</name><name sortKey="Leboldus, J M" sort="Leboldus, J M" uniqKey="Leboldus J" first="J M" last="Leboldus">J M Leboldus</name><name sortKey="S Ndreli, K L" sort="S Ndreli, K L" uniqKey="S Ndreli K" first="K L" last="S Ndreli">K L S Ndreli</name><name sortKey="Sakalidis, M L" sort="Sakalidis, M L" uniqKey="Sakalidis M" first="M L" last="Sakalidis">M L Sakalidis</name></country><country name="Canada"><region name="Colombie-Britannique "><name sortKey="Feau, N" sort="Feau, N" uniqKey="Feau N" first="N" last="Feau">N. Feau</name></region><name sortKey="Hamelin, R C" sort="Hamelin, R C" uniqKey="Hamelin R" first="R C" last="Hamelin">R C Hamelin</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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